BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008E04LP1|AL425871
(789 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1359 1534 0.0
>3x_Contig1359
Length = 7536
Score = 1534 bits (774), Expect = 0.0
Identities = 785/789 (99%)
Strand = Plus / Plus
Query: 1 cgtcagattaaattgttaacgacagaatgcaggattataaaaaaaacataaagggtttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cgtcagattaaattgttaacgacagaatgcaggattataaaaaaaacataaagggtttag 153
Query: 61 tggacatactagatctgttgtctcttagcttcttggcatttagtcctttttgaaagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tggacatactagatctgttgtctcttagcttcttggcatttagtcctttttgaaagagca 213
Query: 121 cattttaagacacacaagaaacggatatctgtgaattacgtagtttctgccaagtaggaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 214 cattttaagacacacaagaaacggatatctgtgaataacgtagtttctgccaagtaggaa 273
Query: 181 cgatgtggaaattgacattgttcttggcgatatgggtaccgataagcttctgttttgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cgatgtggaaattgacattgttcttggcgatatgggtaccgataagcttctgttttgtga 333
Query: 241 ttttagaggacgagtttttatatcttcataaaaatggtatttgcaataagccacaatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttttagaggacgagtttttatatcttcataaaaatggtatttgcaataagccacaatttc 393
Query: 301 actatgaagcagataattcagaggaagagttcgcggtgttttacaacaactgggatggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actatgaagcagataattcagaggaagagttcgcggtgttttacaacaactgggatggat 453
Query: 361 tgcagttaccagaaacgagattcggagaccagttcaccagtgaatatagttttttgaaat 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 454 tgcagttaccagaaacgagattcggagaccagttcaccagtaaatatagttttttgaaat 513
Query: 421 gggttgacgtattctatggtaccctgggtgggcatatgttctccgggactgctgttccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gggttgacgtattctatggtaccctgggtgggcatatgttctccgggactgctgttccct 573
Query: 481 ttggtatgtgttagatgggtgtagatgtgatcaattcgaaaaagggcgacgcgtactctg 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttggtatgtgtaagatgggtgtagatgtgatcaattcgaaaaagggcgacgcgtactctg 633
Query: 541 ggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatctggtaccggtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatctggtaccggtg 693
Query: 601 gtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgagtgcnagttcag 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 694 gtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgagtgcaagttcag 753
Query: 661 ttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgcgcacattggct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgcgcacattggct 813
Query: 721 attataaagtagaactcgataacggtgttgatatagaattttcatctaaggataggtctg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 attataaagtagaactcgataacggtgttgatatagaattttcatctaaggataggtctg 873
Query: 781 ggttgtatg 789
|||||||||
Sbjct: 874 ggttgtatg 882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5553
Number of Sequences: 1807
Number of extensions: 5553
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 789
length of database: 10,358,551
effective HSP length: 16
effective length of query: 773
effective length of database: 10,329,639
effective search space: 7984810947
effective search space used: 7984810947
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)